Welcome to CRMarker v1.1



Advanced prediction:


         Type of data:

     Biomarker type:

       Function type:


Biomarker symbol:

    
 

  


Data Sources:


Table 1 Information of the 4 network data for prediction.
No.NetworkDatabase and versionDownload URL
1PPI networkHPRD, Release 9http://hprd.org/download
2miRNA-target networkmiRTarBase,Release 7.0http://mirtarbase.mbc.nctu.edu.tw/php/download.php
3lncRNA-target networkLncRNA2Target,version: V2.0http://123.59.132.21/lncrna2target/download.jsp
4lncRNA-miRNA networkLncBase, version: V2.0http://carolina.imis.athena-innovation.gr/diana_tools/downloads/


Table 2 Information of the 18 chip data for prediction.
Chip IDAccessionCancer typesamplesReferences
chip1GSE10846Lymphoma cancer414N Engl J Med,Lenz,2008
chip2GSE13507Bladder cancer165J Clin Oncol,Lee,2010
chip3GSE14814NSCLung cancer90J Clin Oncol,Zhu,2010
chip4GSE17537Colon cancer55Gastroenterology,Smith,2010
chip5GSE18520Ovarian cancer53Cancer Cell,Mok,2009
chip6GSE2034Breast cancer286Lancet,Wang,2005
chip7GSE7696Glioblastoma80J Clin Oncol,Murat,2008
chip8GSE3143Breast cancer158Nature,Bild,2006
chip9GSE3141Lung cancer111Nature,Bild,2006
chip10GSE26712Ovarian cancer153Cancer Res,Bonome,2008
chip11GSE14764Ovarian cancer80J pathol,Denkert,2009
chip12GSE17260Ovarian cancer110Plos one,Yoshiharak,2010
chip13GDS4336Pancreatic cancer42Plos one,Zhang,2012
chip14GDS2373SCLung cancer130cancer res,Rapoin,2006
chip15GSE9195Breast cancer77PNAS,Loi S,2010
chip16GSE3494Breast cancer236PNAS,Miller,2005
chip17GSE22226Breast cancer129Breast Cancer Res Treat,Esserman,2012
chip18GSE50081Lung cancer181J Thorac Oncol,Der SD, 2014





Data statistics:

Figure 1. Histogram of the number of cancer RNA markers predicted.                                          Figure 2. Histogram of the number of interactive partners of multiple network data.

Citation: Zhang J*, Yan S, Li R, et al. CRMarker: A manually curated comprehensive resource of cancer RNA markers[J]. International Journal of Biological Macromolecules, 174（2021）263-269, https://doi.org/10.1016/j.ijbiomac.2021.01.186